Complete genome sequence of an isolate of leek yellow stripe virus from garlic in India

Not AvailableThe complete genome sequence of leek yellow stripe virus (LYSV) isolate AC-50 from garlic in India was determined and the predicted amino acid (aa) sequence was analyzed. The LYSV RNA genome is 10,131 nucleotides (nt) long excluding the poly(A) tail (KP168261) and has a large open reading frame (ORF) encoding a putative polyprotein of 3152 aa with conserved motifs typical of members of the genus Potyvirus in the family Potyviridae. The pretty interesting Potyviridae ORF (PIPO) coding region was identified in the P3 coding region. LYSV isolate AC-50 shares maximum nt and aa sequence identity of 79.9% and 87.2% with a LYSV isolate from Australia (HQ258895) at the full genome and polyprotein level, respectively, and clusters with clade II isolates from China, Mexico, Australia, Brazil and Spain. The P1 coding region of isolate AC-50 was highly variable with an identity range of 48.9- 70.9% with other LYSV isolates and a deletion of 204 nt compared to Japanese and Australian isolates. The ratio of nonsynonymous (dN) and synonymous (dS) polymorphic sites suggested that purifying selection dominates in the evolution of LYSV and the mean dN/dS ratio was highest for P1, confirming that this coding region is under less evolutionary constraints

Adipose-targeted SWELL1 deletion exacerbates obesity- and age-related nonalcoholic fatty liver disease

Healthy expansion of adipose tissue is critical for the maintenance of metabolic health, providing an optimized reservoir for energy storage in the form of triacylglycerol-rich lipoproteins. Dysfunctional adipocytes that are unable to efficiently store lipid can result in lipodystrophy and contribute to nonalcoholic fatty liver disease (NAFLD) and metabolic syndrome. Leucine-rich repeat containing protein 8a/SWELL1 functionally encodes the volume-regulated anion channel complex in adipocytes, is induced in early obesity, and is required for normal adipocyte expansion during high-fat feeding. Adipose-specific SWELL1 ablation (Adipo KO) leads to insulin resistance and hyperglycemia during caloric excess, both of which are associated with NAFLD. Here, we show that Adipo-KO mice exhibited impaired adipose depot expansion and excess lipolysis when raised on a variety of high-fat diets, resulting in increased diacylglycerides and hepatic steatosis, thereby driving liver injury. Liver lipidomic analysis revealed increases in oleic acid-containing hepatic triacylglycerides and injurious hepatic diacylglyceride species, with reductions in hepatocyte-protective phospholipids and antiinflammatory free fatty acids. Aged Adipo-KO mice developed hepatic steatosis on a regular chow diet, and Adipo-KO male mice developed spontaneous, aggressive hepatocellular carcinomas (HCCs). These data highlight the importance of adipocyte SWELL1 for healthy adipocyte expansion to protect against NAFLD and HCC in the setting of overnutrition and with aging

Rare occurrence of sunfish Mola mola (Linnaeus) from the coastal waters off Visakhapatnam (Bay of Bengal)

The occurrence of sunfish in any sea is a rare event. It is so rare that even fishermen engaged in fishing throughout their lives find it totally strange when they come across one. On 6 May, 1986, a local fisherman reported to the Zoology Department of the Andhra University that a very strange looking fish was part of that day's catch

Symmetrical Derivative of Anthrone as a Novel Receptor for Mercury Ions: Enhanced Performance of Modified Screen-Printed Electrode

Voltammetric sensor using a symmetrical derivative of anthrone3 (1,7-diamino-3,9-dibutyl benzo[1,2,3-de:4,5,6-d’e’]diquinoline-2,8(3H,9H)-dione) (SPE-A) has been developed as a probe for Hg(II) ions. Performance of the probe as screen-printed electrode modified with the receptor (SPE-A) has been compared with anthrone3 in solution phase, using 1:1 water-acetonitrile solvent system. Anthrone3 displayed an electrochemically quasi-reversible nature in voltammograms with both the systems and is presented as a novel disposable voltammetric sensor for mercury ions. Upon interaction with cations, both the electrode systems showed sensitivity towards Hg2+ ions with a lower detection limit of 0.61 µM. The magnitude of the voltammetric current with the SPE-A exhibited three times the current obtained with a bare glassy carbon electrode (GC). Kinetic performance of the SPE-A electrode is better than the GC electrode. The morphological studies indicate reusability of the electrodes

Forecasting of growth rates of wheat yield of Uttar Pradesh through non-linear growth models

Wheat production in India is about 70 million tonnes per year which counts for approximately 12 per cent of world’s production. Being the second largest in population, it is also the second largest in wheat consumption after China, with a huge and growing wheat demand. Major wheat growing states in India are Uttar Pradesh, Punjab, Haryana, Rajasthan, Madhya Pradesh, Gujarat and Bihar. All of north is replenished with wheat cultivation. Uttar Pradesh, the largest wheat growing region of the country, produces around 28 million tonnes of wheat and Bihar produces around 5 million tonnes. The usual parametric approach for growth rate analysis is to assume multiplicative error in the underlying nonlinear geometric model and then fit the linearized model by ‘method of least squares'. This paper deals with a critical study of wheat yield of Uttar Pradesh with a non-linear approach. The available data of rice during different years is taken into consideration and different statistical models are fitted for that. The time series data on annual yield of wheat in UP from 1970-2010 were collected from various sources. Growth rates are computed through non-linear models, viz. Logistic, Gompertz and Monomolecular models. Different nonlinear procedures such as Gauss-Newton Method, Steepest-Descent Method, Levenberg-Merquadt Technique and Do Not Use Derivative (DUD) Method were used in this study to estimate the nonlinear growth rates. The results showed that logistic model performed better followed by Gompertz and monomolecular

The SWELL1-LRRC8 complex regulates endothelial AKT-eNOS signaling and vascular function

The endothelium responds to numerous chemical and mechanical factors in regulating vascular tone, blood pressure, and blood flow. The endothelial volume-regulated anion channel (VRAC) has been proposed to be mechanosensitive and thereby sense fluid flow and hydrostatic pressure to regulate vascular function. Here, we show that the leucine-rich repeat-containing protein 8a, LRRC8A (SWELL1), is required for VRAC in human umbilical vein endothelial cells (HUVECs). Endothelial LRRC8A regulates AKT-endothelial nitric oxide synthase (eNOS) signaling under basal, stretch, and shear-flow stimulation, forms a GRB2-Cav1-eNOS signaling complex, and is required for endothelial cell alignment to laminar shear flow. Endothelium-restricte

Small molecule SWELL1 complex induction improves glycemic control and nonalcoholic fatty liver disease in murine Type 2 diabetes

Type 2 diabetes is associated with insulin resistance, impaired pancreatic β-cell insulin secretion, and nonalcoholic fatty liver disease. Tissue-specific SWELL1 ablation impairs insulin signaling in adipose, skeletal muscle, and endothelium, and impairs β-cell insulin secretion and glycemic control. Here, we show that

Therapeutic potential of endophytic bacteria from ethnomedicinal plants used by the traditional healers of North East India

North East Indian Himalayan Region (NEIHR) is endowed with a diverse ecosystem. The indigenous people of this region have good traditional knowledge to combat various diseases and physical ailments using ethnomedicinal plants that were gained through experience over years. Some of the plants have been incorporated in the conventional medicines. However, many of the plants have not been scientifically explored since they remain endemic to a particular region and the traditional healers kept it as secret knowledge. The majority of the endophyte of NEIHR belongs to genus Acinetobacter, Bacillus, Microbacterium, Pseudomonas, Serratia, and Streptomyces. Endophytic bacteria exhibit antimicrobial activities against important human pathogens such as Escherichia coli, Pseudomonas aeruginosa, Salmonella enterica, Streptococcus pyogenes, Staphylococcus aureus, etc. Bioactive strains display potential anticancer and antioxidant activities. This review also incorporates some of the potential unexplored medicinal plants used by the ethnic population of this region for treating common diseases and the importance of exploring bioactive compounds from the associated bacteria. It will also highlight the prospects of discovering novel bioactive compounds that will have a new and novel mechanism of actions for combating the drug resistant pathogens.